IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV7-5, TRAV7D-5 and TRAV7N-5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                               
                                               
                                                1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                Q   Q   K   V   Q   Q   S   P       E   S   L   T   V   S   E   G   A   M   A  
  AC004406   TRAV7-5*01  F   V-REGION gDNA     cag cag aag gtg cag cag agc cca ... gaa tcc ctc act gtc tca gag gga gcc atg gcc 

                                                                                                                               
  AE007512   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  X56724     TRAV7N-5*01 F   V-REGION gDNA                                                                                     

                                                                                                                               
  X55825     TRAV7-5*02  (F) V-REGION cDNA                                                                                     

                                                                                                                               
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF034160   TRAV7-5*03  F   V-REGION cDNA                                                                                     



                                                                           ___________________CDR1-IMGT____________________    
                                               
                                                20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                S   L   N   C   T   F   S   D   G   T                           S   D   N   F  
  AC004406   TRAV7-5*01  F   V-REGION gDNA     tct ctc aac tgc act ttc agt gat ggt act ... ... ... ... ... ... tct gac aac ttc 

                                                                                                                               
  AE007512   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008685   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                R   S                                          
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- c-- t-- ... ... ... ... ... ... --- --- --- --- 

                                                                                R   S                                          
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- c-- t-- ... ... ... ... ... ... --- --- --- --- 

                                                                                R   S                                          
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- c-- t-- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  X56724     TRAV7N-5*01 F   V-REGION gDNA                                                                                     

                                                                                                                               
  X55825     TRAV7-5*02  (F) V-REGION cDNA                                                                                     

                                                                                R   S                                          
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- c-- t-- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                    N          
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     --- --- --- --- --g --- --- --- --- --- ... ... ... ... ... ... --- a-- --- --- 

                                                                                                                               
  AF034160   TRAV7-5*03  F   V-REGION cDNA                                                                                     



                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                R   W   Y   R   Q   H   S   G   K   G   L   E   V   L   V   S   I   F   S      
  AC004406   TRAV7-5*01  F   V-REGION gDNA     agg tgg tac aga cag cat tct ggg aaa ggc ctt gag gtg cta gtg tcc atc ttc tct ... 

                                                                                                                               
  AE007512   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                               
  AE008685   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                M                              
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- a-- --- --- --- --- --- --- ... 

                                                                                                M                              
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- a-- --- --- --- --- --- --- ... 

                                                                                                M                              
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- a-- --- --- --- --- --- --- ... 

                                                                                                                               
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- ... 

                                                                                                                               
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- ... 

                                                                                                                               
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- ... 

                                                                                                                               
  X56724     TRAV7N-5*01 F   V-REGION gDNA                                                   - --- --g --- --- --- --- --- ... 

                                                                                                A       M                      
  X55825     TRAV7-5*02  (F) V-REGION cDNA                                                     -ca --g a-- --- --- --- --- ... 

                                                                                                                               
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- ... 

                                                                            A                                                  
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     --- --- --- --- --- --- --- -c- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                            A                                                  
  AF034160   TRAV7-5*03  F   V-REGION cDNA                         --- --- -c- --- --- --- --- --- --- --- --- --- --- --- ... 



                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                            D   G   E   K   E   E                       G   R   F   T   A   H  
  AC004406   TRAV7-5*01  F   V-REGION gDNA     ... ... ... gat ggt gaa aag gaa gaa ... ... ... ... ... ggc aga ttt aca gct cac 

                                                                                                                               
  AE007512   TRAV7-5*01  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV7-5*01  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                            S                  
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --t --- --- --- --- 

                                                                                                            S                  
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --t --- --- --- --- 

                                                                                                            S                  
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --t --- --- --- --- 

                                                                                                            S                  
  X56724     TRAV7N-5*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --t --- --- --- --- 

                                                                                                                            Q  
  X55825     TRAV7-5*02  (F) V-REGION cDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --g 

                                                                                                            S                  
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --t --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AF034160   TRAV7-5*03  F   V-REGION cDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                               
                                               
                                                80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                L   N   R   A   S       L   H   V   S   L   H   I   R   E   P   Q   P   S   D  
  AC004406   TRAV7-5*01  F   V-REGION gDNA     ctc aat aga gcc agc ... ctg cat gtt tcc cta cac atc aga gag ccg caa ccc agt gac 

                                                                                                                               
  AE007512   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008685   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                    F                                          
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- 

                                                                                    F                                          
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- 

                                                                                    F                                          
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- 

                                                                                    F                                          
  X56724     TRAV7N-5*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- 

                                                V                                                                              
  X55825     TRAV7-5*02  (F) V-REGION cDNA     g-- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                    F                                          
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- 

                                                                N                                                              
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     --- --- --- --- -a- ... t-- --- --- --- --- --- --- --- --a --a --- --- --- --- 

                                                                N                                                              
  AF034160   TRAV7-5*03  F   V-REGION cDNA     --- --- --- --- -a- ... t-- --- --- --- --- --- --- --- --a --a --- --- --- --- 



                                                                       ___CDR3-IMGT____
                                               
                                                99 100 101 102 103 104 105 106 107 
                                                S   A   V   Y   L   C   A   M   S  
  AC004406   TRAV7-5*01  F   V-REGION gDNA     tct gct gtc tac ctc tgt gca atg agc a

                                                                                   
  AE007512   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                   
  AE008685   TRAV7-5*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                            V      
  AC004101   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- g-- --- -

                                                                            V      
  AE007512   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- g-- --- -

                                                                            V      
  AE008684   TRAV7D-5*01 F   V-REGION gDNA     --- --- --- --- --- --- --- g-- --- -

                                                        L                   V      
  AC163653   TRAV7N-5*01 F   V-REGION gDNA     --- --- c-- --- --- --- --- g-- --- -

                                                        L                   V      
  AC188458   TRAV7N-5*01 F   V-REGION gDNA     --- --- c-- --- --- --- --- g-- --- -

                                                        L                   V      
  IMGT000082 TRAV7N-5*01 F   V-REGION gDNA     --- --- c-- --- --- --- --- g-- --- -

                                                        L                   V      
  X56724     TRAV7N-5*01 F   V-REGION gDNA     --- --- c-- --- --- --- --- g-- --- -

                                                                               
  X55825     TRAV7-5*02  (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --

                                                        L                   V      
  IMGT000082 TRAV7D-5*02 F   V-REGION gDNA     --- --- c-- --- --- --- --- g-- --- -

                                                                            V      
  IMGT000082 TRAV7-5*03  F   V-REGION gDNA     --- --- --- --- --- --- --- g-- --- -

                                                                            V      
  AF034160   TRAV7-5*03  F   V-REGION cDNA     --- --- --- --- --- --- --- g-- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun